helix.plot_structure

helix.plot_structure(point_size=12, type_colors=None, sphere=True, parallel_proj=True, draw_bonds=False, max_bond_dist=2.0)

Render the atomic structure in 3D using PyVista.

Parameters:

• Pos (ndarray) – Atom positions.

• Types (ndarray) – Atom type ids.

• Lims (list, optional) – Box limits for drawing the simulation cell.

• point_size (int, optional) – Size of rendered atoms.

• type_colors (dict, optional) – Mapping from type id to display color.

• sphere (bool, optional) – Render atoms as spheres when True.

• parallel_proj (bool, optional) – Use parallel projection.

• draw_bonds (bool, optional) – Draw bonds between unlike atom types.

• max_bond_dist (float, optional) – Distance cutoff used for bond drawing.