group_molecules.plot_diagonalized_condensed_kernel#

group_molecules.plot_diagonalized_condensed_kernel(kernel, opacity=0.5, factor=1, with_radius=True, opacity_radius=1, factor_radius=.3, screenshot_button=True, window_size_screenshot=(1000, 1000))#

Diagonalize and plot a condensed kernel for each molecule. One can navigate through the eigenmodes using a slider for each molecule.

Parameters:

  • kernel (str) – The kernel to be diagonalized and plotted

  • opacity (float, optional) – The opacity of the plot. By default equals to 1

  • factor (float, optional) – The factor by which the plotted_property will be multiplied. By default equals to 1

  • with_radius (bool, optional) – Chose to show the radius and the bonds between the atoms or not. By default True

  • opacity_radius (float, optional) – The opacity of the radius plot. By default .8

  • factor_radius (float, optional) – The factor by which the radius will be multiplied. By default .3

  • screenshot_button (bool, optional) – Adds a screenshot button. True by default

  • window_size_screenshot (tuple, optional) – The size of the screenshots. By default (1000,1000)

Returns:

None – The plotter should display when using this function